If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 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'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ), 'gf_id' => 'HOM05D000617', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000617' ), 'data_identifier' => 'HOM05D000617', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000617', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '926', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p13270' => 'bna', 'A03p51140' => 'bna', 'A05p19370' => 'bna', 'A05p44230' => 'bna', 'A06p02230' => 'bna', 'A10p07540' => 'bna', 'A10p11430' => 'bna', 'A10p14020' => 'bna', 'Aa31LG10G3040' => 'aar', 'Aa31LG3G12500' => 'aar', 'Aa31LG3G9900' => 'aar', 'Aa31LG5G13350' => 'aar', 'Aa31LG6G9380' => 'aar', 'Aa31sc170G50' => 'aar', 'Aa31sc323G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4119' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4120' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.711' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.712' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2518' => 'aag', 'Actinidia02623' => 'ach', 'Actinidia03464' => 'ach', 'Actinidia05391' => 'ach', 'Actinidia15002' => 'ach', 'Actinidia21736' => 'ach', 'Actinidia25282' => 'ach', 'Actinidia29471' => 'ach', 'Actinidia29472' => 'ach', 'Actinidia32125' => 'ach', 'Actinidia34278' => 'ach', 'Actinidia39752' => 'ach', 'Ah.01g017030' => 'amhyb', 'Ah.01g023910' => 'amhyb', 'Ah.05g171030' => 'amhyb', 'Ah.05g171040' => 'amhyb', 'Ah.08g210260' => 'amhyb', 'AL1G52280' => 'aly', 'AL1G59730' => 'aly', 'AL1G59780' => 'aly', 'AL3G12300' => 'aly', 'AL8G29260' => 'aly', 'AL8G32470' => 'aly', 'Aqoxy3G03092' => 'aox', 'Aqoxy4G02706' => 'aox', 'Aqoxy5G04362_Aqoxy5G04363' => 'aox', 'Aqoxy5G04364' => 'aox', 'Aqoxy6G00241' => 'aox', 'Aqoxy7G03938' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N29JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV43C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M2FQR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.965PKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3CFJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3XHUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK3JWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFGJ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6H77P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8AD1I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MLG1NM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MNG1Z1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4VLKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2LR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0XMQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDI3WX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFB1VD' => 'arhy', 'AT1G44350' => 'ath', 'AT1G51760' => 'ath', 'AT1G51780' => 'ath', 'AT3G02875' => 'ath', 'AT5G54140' => 'ath', 'AT5G56650' => 'ath', 'AT5G56660' => 'ath', 'ATR0081G052' => 'atr', 'ATR0579G003' => 'atr', 'ATR0579G008' => 'atr', 'ATR0579G164' => 'atr', 'ATR0665G531' => 'atr', 'ATR0772G169' => 'atr', 'ATR0772G195' => 'atr', 'ATR0789G108' => 'atr', 'ATR1065G001' => 'atr', 'Atru.chr1.132' => 'acertr', 'Atru.chr1.3613' => 'acertr', 'Atru.chr11.1952' => 'acertr', 'Atru.chr11.1953' => 'acertr', 'Atru.chr11.2067' => 'acertr', 'Atru.chr12.2487' => 'acertr', 'Atru.chr13.1493' => 'acertr', 'Atru.chr13.1494' => 'acertr', 'Atru.chr3.988' => 'acertr', 'Atru.chr4.3200' => 'acertr', 'Atru.chr7.1257' => 'acertr', 'Atru.chr7.1514' => 'acertr', 'Atru.chr8.1425' => 'acertr', 'Atru.chr8.1427' => 'acertr', 'AUR62006252' => 'cqu', 'AUR62006254' => 'cqu', 'AUR62012882' => 'cqu', 'AUR62014327' => 'cqu', 'AUR62019067' => 'cqu', 'AUR62022294' => 'cqu', 'AUR62023885' => 'cqu', 'AUR62027106' => 'cqu', 'AUR62028491' => 'cqu', 'AUR62028493' => 'cqu', 'AUR62028501' => 'cqu', 'AUR62028502' => 'cqu', 'BcaB01g04412' => 'bca', 'BcaB02g11047' => 'bca', 'BcaB02g11050' => 'bca', 'BcaB02g11051' => 'bca', 'BcaB07g33634' => 'bca', 'BcaB07g33951' => 'bca', 'BcaB08g35765' => 'bca', 'BcaB08g36041' => 'bca', 'BcaB08g36071' => 'bca', 'BcaC01g06436' => 'bca', 'BcaC01g06439' => 'bca', 'BcaC04g20063' => 'bca', 'BcaC04g20379' => 'bca', 'BcaC05g30498' => 'bca', 'BcaC05g30499' => 'bca', 'BcaC08g42845' => 'bca', 'BcaC08g43347' => 'bca', 'BcaC08g43938' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01000' => 'bna', 'BolC3t13991H' => 'bol', 'BolC5t35056H' => 'bol', 'BolC6t35196H' => 'bol', 'BolC6t35798H' => 'bol', 'BolC6t36491H' => 'bol', 'BolC9t57301H' => 'bol', 'BolC9t57675H' => 'bol', 'BraA03t10639Z' => 'bra', 'BraA05t20841Z' => 'bra', 'BraA06t23280Z' => 'bra', 'BraA06t23433Z' => 'bra', 'BraA08t34443Z' => 'bra', 'BraA09t35779Z' => 'bra', 'BraA10t43237Z' => 'bra', 'BraA10t43493Z' => 'bra', 'BraSC36t46050Z' => 'bra', 'C03p15540' => 'bna', 'C06p00610' => 'bna', 'C06p07060' => 'bna', 'C06p13310' => 'bna', 'C09p44290' => 'bna', 'C09p48250' => 'bna', 'C09p76010' => 'bna', 'CAN.G1018.10' => 'can', 'CAN.G1025.7' => 'can', 'CAN.G1143.38' => 'can', 'CAN.G1241.8' => 'can', 'CAN.G1246.3' => 'can', 'CAN.G1246.4' => 'can', 'CAN.G574.50' => 'can', 'CAN.G641.57' => 'can', 'CAN.G65.149' => 'can', 'CANSAT21G1037' => 'cansat', 'CANSAT56G3875' => 'cansat', 'CANSAT56G4103' => 'cansat', 'CANSAT64G0371' => 'cansat', 'CANSAT64G1337' => 'cansat', 'CANSAT78G0086' => 'cansat', 'CARHR035910' => 'chi', 'CARHR041920' => 'chi', 'CARHR076890' => 'chi', 'CARHR254580' => 'chi', 'CARHR267330' => 'chi', 'CARHR270340' => 'chi', 'CARHR270350' => 'chi', 'Carub.0001s3516' => 'cru', 'Carub.0001s4065' => 'cru', 'Carub.0001s4067' => 'cru', 'Carub.0003s0198' => 'cru', 'Carub.0008s1443' => 'cru', 'Carub.0008s1713' => 'cru', 'Ca_16574_v3' => 'car', 'Ca_16791_v3' => 'car', 'Ca_16807_v3' => 'car', 'Ca_22796_v3' => 'car', 'Ca_22800_v3' => 'car', 'Ca_23290_v3' => 'car', 'Ca_29569_v3' => 'car', 'CBR_g28088' => 'cbr', 'Cc02_g00710' => 'ccan', 'Cc04_g02290' => 'ccan', 'Cc06_g06300' => 'ccan', 'Cc06_g10900' => 'ccan', 'Cc10_g12030' => 'ccan', 'Cc11_g14190' => 'ccan', 'CDE02G3383' => 'cde', 'CDE03G0003' => 'cde', 'CDE04G2308' => 'cde', 'CDE04G2748' => 'cde', 'CDE04G2805' => 'cde', 'CDE06G0850' => 'cde', 'CDE06G1732' => 'cde', 'CDE07G0085' => 'cde', 'CDE08G0190' => 'cde', 'CDE08G1608' => 'cde', 'CDE12G0022' => 'cde', 'CDE12G0706' => 'cde', 'Cfa003140' => 'cfa', 'Cfa003616' => 'cfa', 'Cfa009098' => 'cfa', 'Cfa016146' => 'cfa', 'Cfa018582' => 'cfa', 'Cfa021267' => 'cfa', 'Cfa024053' => 'cfa', 'Cfa025017' => 'cfa', 'Ciclev10000964m.g' => 'ccl', 'Ciclev10008406m.g' => 'ccl', 'Ciclev10011738m.g' => 'ccl', 'Ciclev10013480m.g' => 'ccl', 'Ciclev10020281m.g' => 'ccl', 'Ciclev10024477m.g' => 'ccl', 'Ciclev10025591m.g' => 'ccl', 'Ciclev10031540m.g' => 'ccl', 'CiPaw.01G228100' => 'cil', 'CiPaw.02G143200' => 'cil', 'CiPaw.03G220300' => 'cil', 'CiPaw.04G153500' => 'cil', 'CiPaw.06G039500' => 'cil', 'CiPaw.06G075100' => 'cil', 'CiPaw.10G013600' => 'cil', 'CiPaw.10G013700' => 'cil', 'CiPaw.10G013900' => 'cil', 'CiPaw.10G014000' => 'cil', 'CiPaw.15G087100' => 'cil', 'CiPaw.16G066100' => 'cil', 'ClCG03G015930' => 'cla', 'ClCG04G010290' => 'cla', 'ClCG05G024990' => 'cla', 'ClCG07G013560' => 'cla', 'ClCG08G005780' => 'cla', 'ClCG10G018630' => 'cla', 'COL.COLO4_14385' => 'col', 'COL.COLO4_18258' => 'col', 'COL.COLO4_24697' => 'col', 'COL.COLO4_29652' => 'col', 'COL.COLO4_29653' => 'col', 'COL.COLO4_30593' => 'col', 'COL.COLO4_37893' => 'col', 'Cpa.g.c45024' => 'cpa', 'Cpa.g.sc104.81' => 'cpa', 'Cpa.g.sc131.18' => 'cpa', 'Cpa.g.sc131.19' => 'cpa', 'Cpa.g.sc146.57' => 'cpa', 'Cpa.g.sc3.168' => 'cpa', 'Cpa.g.sc3.169' => 'cpa', 'Cpa.g.sc340.6' => 'cpa', 'Cpa.g.sc340.7' => 'cpa', 'Cpa.g.sc340.8' => 'cpa', 'Cpa.g.sc367.3' => 'cpa', 'Cpa.g.sc64.95' => 'cpa', 'Cpa.g.sc78.54' => 'cpa', 'Cpa.g.sc78.55' => 'cpa', 'Cre12.g560800' => 'cre', 'Cre17.g728100' => 'cre', 'CsaV3_1G040020' => 'csa', 'CsaV3_3G037600' => 'csa', 'CsaV3_3G037610' => 'csa', 'CsaV3_3G044080' => 'csa', 'CsaV3_5G031900' => 'csa', 'CsaV3_6G034390' => 'csa', 'CsaV3_6G040920' => 'csa', 'CSS0015088' => 'camsi', 'CSS0021598' => 'camsi', 'CSS0027539' => 'camsi', 'CSS0030629' => 'camsi', 'CSS0030894' => 'camsi', 'CSS0038709' => 'camsi', 'CSS0039417' => 'camsi', 'CSS0041296' => 'camsi', 'CSS0041654' => 'camsi', 'CSS0044086' => 'camsi', 'CSS0048242' => 'camsi', 'CSS0049633' => 'camsi', 'DCAR_003363' => 'dca', 'DCAR_003557' => 'dca', 'DCAR_007105' => 'dca', 'DCAR_007106' => 'dca', 'DCAR_007604' => 'dca', 'DCAR_009170' => 'dca', 'DCAR_009171' => 'dca', 'DCAR_012009' => 'dca', 'DCAR_012011' => 'dca', 'DCAR_020729' => 'dca', 'DCAR_026370' => 'dca', 'DCAR_031421' => 'dca', 'Dinv07209' => 'din', 'Dinv17289' => 'din', 'Dinv21150' => 'din', 'Dinv24908' => 'din', 'Dinv27302' => 'din', 'Dinv30406' => 'din', 'Dinv31116' => 'din', 'Dinv31732' => 'din', 'Dinv36726' => 'din', 'Dinv42283' => 'din', 'Duzib041G0211' => 'dzi', 'Duzib068G0960' => 'dzi', 'Duzib068G1211' => 'dzi', 'Duzib093G0271' => 'dzi', 'Duzib093G0881' => 'dzi', 'Duzib093G1237' => 'dzi', 'Duzib106G1170' => 'dzi', 'Duzib116G0406' => 'dzi', 'Duzib160G0761' => 'dzi', 'Duzib168G1580' => 'dzi', 'Duzib192G0133' => 'dzi', 'Duzib235G1016' => 'dzi', 'Duzib248G0952' => 'dzi', 'ECA232G2879' => 'eca', 'ECA233G4185' => 'eca', 'ECA234G2625' => 'eca', 'ECA238G0489' => 'eca', 'ECA238G4238' => 'eca', 'ECA247G0126' => 'eca', 'EL10Ac1g01028' => 'bvu', 'EL10Ac7g16828' => 'bvu', 'EL10Ac7g16831' => 'bvu', 'EL10Ac9g21143' => 'bvu', 'EL10Ac9g22068' => 'bvu', 'Eucgr.B03368' => 'egr', 'Eucgr.C03691' => 'egr', 'Eucgr.C03922' => 'egr', 'Eucgr.F03096' => 'egr', 'Eucgr.F03795' => 'egr', 'Eucgr.K00046' => 'egr', 'Eucgr.K00453' => 'egr', 'Eucgr.K02589' => 'egr', 'Eucgr.K02596' => 'egr', 'Eucgr.K02598' => 'egr', 'Eucgr.K02599' => 'egr', 'FAN02G0142' => 'fan', 'FAN02G1084' => 'fan', 'FAN02G2035' => 'fan', 'FAN02G3081' => 'fan', 'FAN02G4397' => 'fan', 'FAN03G2367' => 'fan', 'FAN03G3392' => 'fan', 'FAN05G4913' => 'fan', 'FAN07G0060' => 'fan', 'FAN09G0852' => 'fan', 'FAN09G0941' => 'fan', 'FAN09G3708' => 'fan', 'FAN09G4100' => 'fan', 'FAN10G0296' => 'fan', 'FAN10G1892' => 'fan', 'FAN12G1886' => 'fan', 'FAN14G0508' => 'fan', 'FAN14G1416' => 'fan', 'FAN14G2603' => 'fan', 'FAN14G2806' => 'fan', 'FAN14G3934' => 'fan', 'FAN14G4682' => 'fan', 'FAN14G5316' => 'fan', 'FAN15G1484' => 'fan', 'FAN17G1962' => 'fan', 'FAN18G0765' => 'fan', 'FAN18G1592' => 'fan', 'FAN18G2039' => 'fan', 'FAN18G2703' => 'fan', 'FAN18G2871' => 'fan', 'FAN19G3037' => 'fan', 'FAN20G1734' => 'fan', 'FAN22G1933' => 'fan', 'FAN23G0446' => 'fan', 'FAN24G1018' => 'fan', 'FAN26G1642' => 'fan', 'FAN26G3112' => 'fan', 'FAN27G0280' => 'fan', 'FAN28G0336' => 'fan', 'FvH4_1g06730' => 'fve', 'FvH4_2g27160' => 'fve', 'FvH4_3g32806' => 'fve', 'FvH4_4g02410' => 'fve', 'FvH4_4g35100' => 'fve', 'FvH4_5g25220' => 'fve', 'FvH4_5g30160' => 'fve', 'FvH4_5g32340' => 'fve', 'FvH4_6g19670' => 'fve', 'FvH4_6g19690' => 'fve', 'FvH4_6g19700' => 'fve', 'FvH4_6g19710' => 'fve', 'FvH4_6g30440' => 'fve', 'FvH4_6g32830' => 'fve', 'FvH4_7g33061' => 'fve', 'Glyma.04G226600' => 'gma', 'Glyma.04G247600' => 'gma', 'Glyma.06G115100' => 'gma', 'Glyma.07G013200' => 'gma', 'Glyma.07G013300' => 'gma', 'Glyma.08G196800' => 'gma', 'Glyma.08G196900' => 'gma', 'Glyma.08G197000' => 'gma', 'Glyma.08G197100' => 'gma', 'Glyma.08G197200' => 'gma', 'Glyma.08G197300' => 'gma', 'Glyma.08G292000' => 'gma', 'Glyma.10G121554' => 'gma', 'Glyma.13G352400' => 'gma', 'Glyma.15G022300' => 'gma', 'Glyma.18G132000' => 'gma', 'Gohir.A04G060000' => 'ghi', 'Gohir.A04G098900' => 'ghi', 'Gohir.A05G027600' => 'ghi', 'Gohir.A05G235600' => 'ghi', 'Gohir.A06G045400' => 'ghi', 'Gohir.A06G070100' => 'ghi', 'Gohir.A10G062700' => 'ghi', 'Gohir.D04G000015' => 'ghi', 'Gohir.D04G000500' => 'ghi', 'Gohir.D04G096100' => 'ghi', 'Gohir.D04G138400' => 'ghi', 'Gohir.D05G029400' => 'ghi', 'Gohir.D05G237901' => 'ghi', 'Gohir.D06G045900' => 'ghi', 'Gohir.D06G068700' => 'ghi', 'Gohir.D10G064400' => 'ghi', 'Gorai.009G029600' => 'gra', 'Gorai.009G246300' => 'gra', 'Gorai.009G398600' => 'gra', 'Gorai.010G051100' => 'gra', 'Gorai.010G080300' => 'gra', 'Gorai.011G068400' => 'gra', 'Gorai.012G001500' => 'gra', 'Gorai.012G123400' => 'gra', 'GSVIVG01008852001' => 'vvi', 'GSVIVG01015256001' => 'vvi', 'GSVIVG01016901001' => 'vvi', 'GSVIVG01020159001' => 'vvi', 'GSVIVG01033907001' => 'vvi', 'GSVIVG01033909001' => 'vvi', 'GSVIVG01038664001' => 'vvi', 'GSVIVG01038665001' => 'vvi', 'HanXRQChr02g0031481' => 'han', 'HanXRQChr03g0060401' => 'han', 'HanXRQChr08g0209041' => 'han', 'HanXRQChr09g0260441' => 'han', 'HanXRQChr10g0309681' => 'han', 'HanXRQChr12g0360671' => 'han', 'HanXRQChr12g0371291' => 'han', 'HanXRQChr16g0503501' => 'han', 'Haze_00310' => 'cav', 'Haze_12131' => 'cav', 'Haze_15909' => 'cav', 'Haze_17500' => 'cav', 'Haze_19666' => 'cav', 'Haze_25862' => 'cav', 'Haze_26781' => 'cav', 'Haze_27043' => 'cav', 'Hma1.2p1_0054F.1_g031050' => 'hma', 'Hma1.2p1_0054F.1_g031080' => 'hma', 'Hma1.2p1_0245F.1_g101530' => 'hma', 'Hma1.2p1_0245F.1_g101540' => 'hma', 'Hma1.2p1_0245F.1_g101550' => 'hma', 'Hma1.2p1_0663F.1_g198623' => 'hma', 'Hma1.2p1_0663F.1_g198680' => 'hma', 'Hma1.2p1_0679F.1_g202220' => 'hma', 'Hma1.2p1_1867F.1_g305900' => 'hma', 'Hma1.2p1_2649F.1_g326132' => 'hma', 'HPP92_001101' => 'vpl', 'HPP92_001969' => 'vpl', 'HPP92_001985' => 'vpl', 'HPP92_003214' => 'vpl', 'HPP92_013119' => 'vpl', 'HPP92_024378' => 'vpl', 'HPP92_024427' => 'vpl', 'Hund00382' => 'sun', 'Hund00736' => 'sun', 'Hund03885' => 'sun', 'Hund07657' => 'sun', 'Hund19877' => 'sun', 'Hund26803' => 'sun', 'Hund26804' => 'sun', 'Lalb_Chr08g0241311' => 'lal', 'Lalb_Chr11g0067481' => 'lal', 'Lalb_Chr22g0351661' => 'lal', 'Lalb_Chr22g0351671' => 'lal', 'Lalb_Chr23g0271071' => 'lal', 'Lalb_Chr23g0271081' => 'lal', 'Lalb_Chr24g0396221' => 'lal', 'Lalb_Chr25g0280511' => 'lal', 'Lalb_Chr25g0280571' => 'lal', 'Lj1g0004712' => 'lja', 'Lj1g0007687' => 'lja', 'Lj1g0019146' => 'lja', 'Lj2A145G64' => 'lonja', 'Lj2A145T63' => 'lonja', 'Lj2g0022862' => 'lja', 'Lj3A893G79' => 'lonja', 'Lj3g0009661' => 'lja', 'Lj3g0016196' => 'lja', 'Lj3g0017643' => 'lja', 'Lj3g0021345' => 'lja', 'Lj4A342G9' => 'lonja', 'Lj4C319G9' => 'lonja', 'Lj4C320T14' => 'lonja', 'Lj4C338T1' => 'lonja', 'Lj4C342T2' => 'lonja', 'Lj4C631T1' => 'lonja', 'Lj6A800G42' => 'lonja', 'Lj7A342G47' => 'lonja', 'Lj7C670T5' => 'lonja', 'Lj9A195T27' => 'lonja', 'Lj9A198T36' => 'lonja', 'Lj9C516T27' => 'lonja', 'Lsat_1_v5_gn_1_36540' => 'lsa', 'Lsat_1_v5_gn_2_54741' => 'lsa', 'Lsat_1_v5_gn_4_136401' => 'lsa', 'Lsat_1_v5_gn_4_43480' => 'lsa', 'Lsat_1_v5_gn_5_134160' => 'lsa', 'Lsat_1_v5_gn_8_160521' => 'lsa', 'Lsat_1_v5_gn_8_3921' => 'lsa', 'Lsat_1_v5_gn_8_3941' => 'lsa', 'Lsat_1_v5_gn_9_4681' => 'lsa', 'Manes.01G044600' => 'mes', 'Manes.01G196200' => 'mes', 'Manes.02G164500' => 'mes', 'Manes.03G030000' => 'mes', 'Manes.04G136800' => 'mes', 'Manes.08G029500' => 'mes', 'Manes.09G050700' => 'mes', 'Manes.11G029500' => 'mes', 'Manes.18G078350' => 'mes', 'Mapoly0001s0346' => 'mpo', 'MBI01_g16586_MAGBIO' => 'mbi', 'MBI04_g06210_MAGBIO' => 'mbi', 'MBI06_g01073_MAGBIO' => 'mbi', 'MBI12_g38817_MAGBIO' => 'mbi', 'MBI17_g32882_MAGBIO' => 'mbi', 'MCO06G166' => 'mco', 'MCO11G570' => 'mco', 'MD01G1229800' => 'mdo', 'MD02G1072200' => 'mdo', 'MD08G1161700' => 'mdo', 'MD09G1197800' => 'mdo', 'MD12G1032400' => 'mdo', 'MD13G1086300' => 'mdo', 'MD14G1032600' => 'mdo', 'MD14G1032700' => 'mdo', 'MD14G1032800' => 'mdo', 'MD14G1032900' => 'mdo', 'MD14G1033000' => 'mdo', 'MD14G1033100' => 'mdo', 'MD14G1033200' => 'mdo', 'MD15G1202000' => 'mdo', 'MD15G1226800' => 'mdo', 'MD15G1346800' => 'mdo', 'MD16G1085700' => 'mdo', 'MD17G1178700' => 'mdo', 'Medtr1205s0010' => 'mtr', 'Medtr1g028070' => 'mtr', 'Medtr2g097530' => 'mtr', 'Medtr2g097540' => 'mtr', 'Medtr2g100510' => 'mtr', 'Medtr2g100520' => 'mtr', 'Medtr2g100530' => 'mtr', 'Medtr2g100550' => 'mtr', 'Medtr2g100560' => 'mtr', 'Medtr3g077040' => 'mtr', 'Medtr3g088590' => 'mtr', 'Medtr3g093030' => 'mtr', 'Medtr5g069140' => 'mtr', 'Medtr8g015510' => 'mtr', 'Medtr8g062090' => 'mtr', 'Medtr8g062790' => 'mtr', 'Medtr8g063060' => 'mtr', 'Medtr8g075310' => 'mtr', 'MELO3C000450.2' => 'cme', 'MELO3C009503.2' => 'cme', 'MELO3C009504.2' => 'cme', 'MELO3C010623.2' => 'cme', 'MELO3C012027.2' => 'cme', 'MELO3C013026.2' => 'cme', 'MELO3C015432.2' => 'cme', 'MELO3C023149.2' => 'cme', 'MELO3C024570.2' => 'cme', 'MELO3C033619.2' => 'cme', 'Migut.C01122' => 'egut', 'Migut.F00137' => 'egut', 'Migut.I00994' => 'egut', 'Migut.J00668' => 'egut', 'Migut.K00570' => 'egut', 'Migut.N03278' => 'egut', 'MSTRG.11010' => 'ama', 'MSTRG.1438' => 'ama', 'MSTRG.19287' => 'ama', 'MSTRG.22610' => 'ama', 'MSTRG.26401' => 'ama', 'MSTRG.26966' => 'ama', 'MSTRG.626' => 'ama', 'MSTRG.7868' => 'ama', 'MSTRG.7869' => 'ama', 'Nitab4.5_0000115g0090' => 'nta', 'Nitab4.5_0000115g0100' => 'nta', 'Nitab4.5_0000257g0150' => 'nta', 'Nitab4.5_0000381g0150' => 'nta', 'Nitab4.5_0000540g0090' => 'nta', 'Nitab4.5_0000757g0040' => 'nta', 'Nitab4.5_0001167g0040' => 'nta', 'Nitab4.5_0001623g0060' => 'nta', 'Nitab4.5_0003381g0060' => 'nta', 'Nitab4.5_0003781g0050' => 'nta', 'Nitab4.5_0004933g0020' => 'nta', 'Nitab4.5_0005820g0020' => 'nta', 'Nitab4.5_0009106g0040' => 'nta', 'Nitab4.5_0009613g0040' => 'nta', 'Nitab4.5_0012838g0010' => 'nta', 'Nitab4.5_0013218g0020' => 'nta', 'Nitab4.5_0013228g0010' => 'nta', 'Nn1g08845' => 'nnu', 'Nn1g08849' => 'nnu', 'Nn3g16986' => 'nnu', 'Nn3g18760' => 'nnu', 'Nn4g22902' => 'nnu', 'Nn5g28343' => 'nnu', 'Nn6g34789' => 'nnu', 'Nn6g34791' => 'nnu', 'Nn6g35389' => 'nnu', 'Nn6g35390' => 'nnu', 'Nn8g38957' => 'nnu', 'Oeu000811.1' => 'oeu', 'Oeu002523.1' => 'oeu', 'Oeu007207.1' => 'oeu', 'Oeu009302.1' => 'oeu', 'Oeu012247.1' => 'oeu', 'Oeu024250.1' => 'oeu', 'Oeu024251.1' => 'oeu', 'Oeu026155.1' => 'oeu', 'Oeu040411.1' => 'oeu', 'Os01g0560000' => 'osa', 'Os01g0706900' => 'osa', 'Os03g0836800' => 'osa', 'Os04g0521800' => 'osa', 'Os06g0691400' => 'osa', 'Os07g0249700' => 'osa', 'Os07g0249800' => 'osa', 'Os07g0249900' => 'osa', 'Peaxi162Scf00013g00212' => 'pax', 'Peaxi162Scf00013g02116' => 'pax', 'Peaxi162Scf00038g01227' => 'pax', 'Peaxi162Scf00066g01315' => 'pax', 'Peaxi162Scf00146g00109' => 'pax', 'Peaxi162Scf00470g00069' => 'pax', 'Peaxi162Scf00477g00817' => 'pax', 'Peaxi162Scf00498g00031' => 'pax', 'Peaxi162Scf00815g00125' => 'pax', 'Peaxi162Scf01141g00125' => 'pax', 'PGR044G0365' => 'pgr', 'PGR102G0374' => 'pgr', 'PGR102G0617' => 'pgr', 'PGR102G0751' => 'pgr', 'PGR102G2211' => 'pgr', 'PGR142G1989' => 'pgr', 'PGR142G2153' => 'pgr', 'PGR142G3818' => 'pgr', 'PGSC0003DMG400000347' => 'stu', 'PGSC0003DMG400002601' => 'stu', 'PGSC0003DMG400004221' => 'stu', 'PGSC0003DMG400015607' => 'stu', 'PGSC0003DMG400029837' => 'stu', 'PGSC0003DMG400030767' => 'stu', 'PGSC0003DMG401027023' => 'stu', 'PGSC0003DMG401032161' => 'stu', 'PGSC0003DMG402032161' => 'stu', 'Phvul.003G055600' => 'pvu', 'Phvul.005G161700' => 'pvu', 'Phvul.009G038900' => 'pvu', 'Phvul.009G127200' => 'pvu', 'Phvul.010G142600' => 'pvu', 'Phvul.010G142700' => 'pvu', 'Potri.002G082400' => 'ptr', 'Potri.003G045200' => 'ptr', 'Potri.005G178900' => 'ptr', 'Potri.006G207300' => 'ptr', 'Potri.006G207400' => 'ptr', 'Potri.010G035900' => 'ptr', 'Potri.012G007400' => 'ptr', 'Potri.015G004000' => 'ptr', 'Potri.016G074100' => 'ptr', 'Pp3s30_880' => 'ppa', 'Pp3s34_180' => 'ppa', 'Pp3s34_741' => 'ppa', 'Pp3s34_760' => 'ppa', 'Pp3s46_160' => 'ppa', 'PRCOL_00006139' => 'pco', 'Prupe.1G260400' => 'ppe', 'Prupe.1G494400' => 'ppe', 'Prupe.2G320500' => 'ppe', 'Prupe.3G053700' => 'ppe', 'Prupe.7G099700' => 'ppe', 'Prupe.7G099800' => 'ppe', 'Prupe.7G099900' => 'ppe', 'Prupe.7G100000' => 'ppe', 'Prupe.7G215300' => 'ppe', 'Psat4g126800' => 'psa', 'Psat4g126840' => 'psa', 'Psat4g192240' => 'psa', 'Psat4g192280' => 'psa', 'Psat4g192360' => 'psa', 'Psat4g194120' => 'psa', 'Psat4g194320' => 'psa', 'Psat5g071000' => 'psa', 'Psat5g087680' => 'psa', 'Psat5g294800' => 'psa', 'Psat5g294880' => 'psa', 'Psat5g294920' => 'psa', 'Psat5g294960' => 'psa', 'PSO161G0105' => 'pso', 'PSO210G1424' => 'pso', 'PSO210G2624' => 'pso', 'PSO210G3351' => 'pso', 'PSO210G4035' => 'pso', 'PSO210G5146' => 'pso', 'PSO210G6163' => 'pso', 'PSO210G6276' => 'pso', 'PSO210G6674' => 'pso', 'PSO210G7470' => 'pso', 'PSO339G6441' => 'pso', 'PSO384G1798' => 'pso', 'PSO478G3543' => 'pso', 'PSO528G0282' => 'pso', 'PSO541G0714' => 'pso', 'PSO675G6858' => 'pso', 'QL02p064823' => 'qlo', 'QL02p064832' => 'qlo', 'QL03p066876' => 'qlo', 'QL04p006404' => 'qlo', 'QL04p006412' => 'qlo', 'QL05p016450' => 'qlo', 'QL07p037965' => 'qlo', 'QL07p037973' => 'qlo', 'QL07p037982' => 'qlo', 'QL07p037993' => 'qlo', 'QL09p006723' => 'qlo', 'QL09p006733' => 'qlo', 'QL09p034146' => 'qlo', 'QL12p025251' => 'qlo', 'QL93p1999_0046' => 'qlo', 'QL93p1999_0057' => 'qlo', 'QL93p1999_0067' => 'qlo', 'QL93p1999_0076' => 'qlo', 'RcHm_v2.0_Chr1g0383081' => 'rch', 'RcHm_v2.0_Chr2g0092471' => 'rch', 'RcHm_v2.0_Chr2g0142041' => 'rch', 'RcHm_v2.0_Chr3g0475011' => 'rch', 'RcHm_v2.0_Chr3g0475021' => 'rch', 'RcHm_v2.0_Chr3g0475031' => 'rch', 'RcHm_v2.0_Chr3g0475041' => 'rch', 'RcHm_v2.0_Chr4g0444701' => 'rch', 'RcHm_v2.0_Chr6g0296071' => 'rch', 'Rhsim03G0069100' => 'rsi', 'Rhsim03G0217000' => 'rsi', 'Rhsim05G0030000' => 'rsi', 'Rhsim08G0230400' => 'rsi', 'Rhsim11G0069300' => 'rsi', 'Rhsim12G0124800' => 'rsi', 'Sabra02G0064600' => 'sbr', 'Sabra03G0021600' => 'sbr', 'Sabra05G0134900' => 'sbr', 'Sabra06G0159600' => 'sbr', 'Sabra08G0147000' => 'sbr', 'Sabra10G0029000' => 'sbr', 'Sabra16G0076700' => 'sbr', 'Sabra16G0079800' => 'sbr', 'SalBow2G0276' => 'sbo', 'SalBow4G0025' => 'sbo', 'SalBow4G0623' => 'sbo', 'SalBow6G0654' => 'sbo', 'SalBow6G2428' => 'sbo', 'SalBow7G3640' => 'sbo', 'Sc07g0005670' => 'sci', 'Sc12g0009980' => 'sci', 'Sc15g0002840' => 'sci', 'Sc20g0006520' => 'sci', 'Sc25g0001080' => 'sci', 'Sed0001258' => 'sed', 'Sed0002202' => 'sed', 'Sed0010297' => 'sed', 'Sed0015146' => 'sed', 'Sed0015513' => 'sed', 'Sed0020287' => 'sed', 'Sed0021718' => 'sed', 'Sed0027969' => 'sed', 'SEGI_01831' => 'sgi', 'SEGI_06815' => 'sgi', 'SEGI_07607' => 'sgi', 'SEGI_07915' => 'sgi', 'SEGI_09055' => 'sgi', 'SEGI_09097' => 'sgi', 'SEGI_10744' => 'sgi', 'SEGI_11598' => 'sgi', 'SEGI_13604' => 'sgi', 'SEGI_14925' => 'sgi', 'SEGI_15440' => 'sgi', 'SEGI_18296' => 'sgi', 'SEGI_18586' => 'sgi', 'SEGI_19558' => 'sgi', 'SEGI_22735' => 'sgi', 'SEGI_22979' => 'sgi', 'SEGI_27413' => 'sgi', 'SEGI_29265' => 'sgi', 'SEGI_29577' => 'sgi', 'SEGI_33483' => 'sgi', 'SEGI_35304' => 'sgi', 'SEGI_35442' => 'sgi', 'SEGI_35919' => 'sgi', 'SEGI_36098' => 'sgi', 'SEGI_36641' => 'sgi', 'SEGI_37447' => 'sgi', 'SGA_v2.0_scaffold1976G54064' => 'sas', 'SGA_v2.0_scaffold31G12879' => 'sas', 'SGA_v2.0_scaffold44G16857' => 'sas', 'SGA_v2.0_scaffold45G16983' => 'sas', 'SGA_v2.0_scaffold52G18961' => 'sas', 'SMO119G0109' => 'smo', 'SMO174G0216' => 'smo', 'SMO358G0595' => 'smo', 'Solyc01g005490.3' => 'sly', 'Solyc03g121270.3' => 'sly', 'Solyc05g006220.3' => 'sly', 'Solyc06g054410.4' => 'sly', 'Solyc06g073060.3' => 'sly', 'Solyc10g079640.2' => 'sly', 'Solyc12g008690.3' => 'sly', 'Sopen01g001500' => 'spe', 'Sopen03g040080' => 'spe', 'Sopen05g002240' => 'spe', 'Sopen06g019490' => 'spe', 'Sopen06g029410' => 'spe', 'Sopen08g018960' => 'spe', 'Sopen10g030280' => 'spe', 'Sopen12g003630' => 'spe', 'Sp1g33520' => 'spa', 'Sp1g38410' => 'spa', 'Sp3g01910' => 'spa', 'Sp6g16170' => 'spa', 'Sp6g18430' => 'spa', 'TAR369G0750' => 'tar', 'TAR369G0793' => 'tar', 'TAR374G0457' => 'tar', 'TAR375G0180' => 'tar', 'TAR376G0114' => 'tar', 'TAR622G0607' => 'tar', 'TAR625G1520' => 'tar', 'TAR626G0178' => 'tar', 'TAR628G0396' => 'tar', 'TAR636G1514' => 'tar', 'THA.LOC104805922' => 'tha', 'THA.LOC104806835' => 'tha', 'THA.LOC104807029' => 'tha', 'THA.LOC104808247' => 'tha', 'THA.LOC104810558' => 'tha', 'THA.LOC104811730' => 'tha', 'THA.LOC104811885' => 'tha', 'THA.LOC104817940' => 'tha', 'THA.LOC104827186' => 'tha', 'Thecc.02G241400' => 'tca', 'Thecc.02G241500' => 'tca', 'Thecc.03G210500' => 'tca', 'Thecc.03G210600' => 'tca', 'Thecc.05G097500' => 'tca', 'Thecc.05G098100' => 'tca', 'Thecc.05G098900' => 'tca', 'Thecc.06G106500' => 'tca', 'Thecc.08G127400' => 'tca', 'Thecc.09G095300' => 'tca', 'Thhalv10011458m.g' => 'esa', 'Thhalv10011481m.g' => 'esa', 'Thhalv10013558m.g' => 'esa', 'Thhalv10014131m.g' => 'esa', 'Thhalv10021977m.g' => 'esa', 'TPR.G11369' => 'tpr', 'TPR.G15463' => 'tpr', 'TPR.G33404' => 'tpr', 'TPR.G35179' => 'tpr', 'TPR.G36562' => 'tpr', 'TPR.G39435' => 'tpr', 'TPR.G6536' => 'tpr', 'TPR.G7218' => 'tpr', 'TPR.G8745' => 'tpr', 'TPR.G8755' => 'tpr', 'TPR.G8758' => 'tpr', 'TPR.G8760' => 'tpr', 'TPR.G8767' => 'tpr', 'TWI31G0663' => 'twi', 'TWI31G1428' => 'twi', 'TWI32G0530' => 'twi', 'TWI34G1068' => 'twi', 'TWI36G0093' => 'twi', 'TWI39G1061' => 'twi', 'TWI60G0456' => 'twi', 'TWI74G0125' => 'twi', 'TWI74G0246' => 'twi', 'TWI74G0588' => 'twi', 'unitig_0.g2866' => 'ugi', 'unitig_747.g21494' => 'ugi', 'unitig_749.g14306' => 'ugi', 'unitig_82.g27004' => 'ugi', 'vmacro00840' => 'vma', 'vmacro06456' => 'vma', 'vmacro07427' => 'vma', 'vmacro07450' => 'vma', 'vmacro10826' => 'vma', 'vmacro16285' => 'vma', 'vmacro18829' => 'vma', 'vmacro23097' => 'vma', 'vmacro23098' => 'vma', 'VMungo0251G1937' => 'vmu', 'VMungo0331G1743' => 'vmu', 'VMungo1309G1004' => 'vmu', 'VMungo1309G1171' => 'vmu', 'Zm00001eb077100' => 'zma', 'Zm00001eb155320' => 'zma', 'Zm00001eb159820' => 'zma', 'Zm00001eb211100' => 'zma', 'Zm00001eb226030' => 'zma', 'Zm00001eb235430' => 'zma', 'Zm00001eb304520' => 'zma', 'Zm00001eb304530' => 'zma', 'Zm00001eb361170' => 'zma' ) $gf_id = 'HOM05D000617' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000617' ) $data_identifier = 'HOM05D000617' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 7, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 14, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 7, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 14, 'cre' => (int) 2, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 39, 'fve' => (int) 15, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 15, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 18, 'mtr' => (int) 18, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 13, 'pso' => (int) 16, 'qlo' => (int) 18, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 26, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 9, 'tca' => (int) 10, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 4, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361170' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1